Deep Ocean Collective Solutions Accelerator Update

The Deep Ocean Collective Solutions Accelerator 2026 group photo at Scripps Institution of Oceanography

Last month (September) scientists from around the world, including early-career scientists met at the Scripps Institution of Oceanography in La Jolla CA to discuss and collectively work on a problem related to the deep ocean. In our case, this was benthic habitat classification using video imagery and coming up with a robust standardised pipeline for processing of visual imagery of the deep ocean, acquired by video acquisition systems on ships, ROVs and AUVs. The benthic classification workshop showcased two key tools- the ESRI full-motion video tool within ArcGIS Pro and the Deep-framex frame extraction libraries for deep sea video (open source tool) run with Python. Both tools have their merits and depending on the metadata available during the survey, can be used as a part of the video pre-processing and analyses pipeline. The Deep Ocean Collective Solutions Accelerator was the second in a series of three accelerator workshops held every three years by the Deep Ocean Observing Strategy (DOOS). A big thank you to Leslie, Amelia and Katie (and others on the team) for organising our cohort and workshops. Overall, the collective solutions accelerator was a tremendous opportunity to work together over the course of 6 months and then intensively during the week on the same problem and aim to get to an achievable solution. In our workshop, we achieved three of the four major goals and through the work of the DOOS Marine Habitat Mapping working group, will continue to work on the goal of identifying a limitations map as the final goal.

View of Scripps Pier in the sunset

International Coralline Algae Meeting 2023 happening in Sweden

Source: Official Website of conference

The 7th International Coralline Algae Meeting will take place in Umeå in Sweden this August 2023! The meeting will be followed by an Arctic field trip in Tromsø, Norway.

The meeting will have a multi-disciplinary flavour, welcoming submissions spanning the ecology, biogeochemistry, geology, evolution, physiology and conservation of free-living, crustose and geniculate coralline algae, with a forward-looking view to emerging frontiers in the field.

7th International Coralline Algae Meeting 2023

The full details of registration can be found at the official conference website. Its been a long wait following lockdown!!

GeoHab Habitat Mapping conference happening in Venice

Apologies for the pause in our Seabed Habitats Seminar Series, we hope to find more speakers, increase collaboration and scientific engagement in the coming year. (Plus I have also been working on the Challenger Society for Marine Science’s Early Career Researcher Seminar Series.) Meanwhile, the GeoHab Habitat Mapping conference will take place in Venice, Italy in 16-20 May 2022 and is a wonderful opportunity to learn about the latest scientific developments from leading scientists in marine habitat mapping including a workshop on “Ocean mapping in the Anthropocene: new technologies and Artificial Intelligence (AI) tools.” It’s quite a challenge as an independent marine scientist, but I hope to present at this conference this year and have submitted an abstract before the deadline! It is possible for Masters and PhD students to apply for support to attend the conference (see Student Awards page on the GeoHab website).

Venice (Collage by DanieleDF1995 (talk), Wikipedia, CC BY-SA 3.0)

Acknowledgements

I would like to acknowledge and thank the Challenger Society for Marine Science, for the Stepping Stones Bursary Award, to make participation possible. Their support is much appreciated.

International Rhodolith Workshop, Roscoff, France

Rhodolith-2018_Group

At the end of last month, the International Rhodolith Workshop took place in Roscoff, Brittany, France and around 50-60 international scientists came from the far reaches to present their work on maerl or rhodoliths. In the geology session, had the brilliant opportunity to present some of our work on the habitat dynamics and the impact of storminess on maerl:

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We went on a boat trip in the Bay of Brest and sampled some of the maerl from an unfished and a fished site. Here are some photos of our trip to collect some specimens from the Bay of Brest.

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Acknowledgements

This trip was funded by the Marine Insitute Travel and Networking Award, Ireland and we would like to thank the organisers of the conference and the Marine Institute for making this trip possible!

GeoHab Conference, Winchester

GuildhallWinchester

This year the annual GeoHab international marine habitat mapping conference took place in Winchester, UK. This is an annual conference with over 160 people attending from 24 countries, for the first time in England! Organised by my former department of study at the National Oceanography Centre, it had been a long time since I had been back in the South of England. The Monday started with a workshop on Object Based Image Analysis (OBIA). Seabed classification methods can be based on classifying pixels, whereas these newer OBIA methods are based on classifying a group of similar pixels or “objects” on the seafloor. The conference began on the Tuesday with the key note speaker Dr. Larry Mayer of Center for Coastal & Ocean Mapping/Joint Hydrographic Center. The first session was on “Technological Advances in Habitat Mapping” with presentations on how new hydrographic surveying techniques can be used for habitat mapping. A poster session took place where one minute oral snapshots of posters were given. The following session on “Coastal and shallow water habitats” discussed environments such as tidal inlets, seagrass beds and mangroves and then “Shelf and deep-sea habitats” had rhodolith beds, shelf breaks, deep sea corals, submarine canyons, mud volcanoes and cold seeps. “National mapping programs” session then discussed important issues regarding the seabed mapping programs internationally and within the UK. The following session on “Anthropogenic and natural disturbance effects” then looked at man’s and nature’s impacts on benthic habitat and “Role of oceanography in habitat mapping” looked at the physical processes driving habitat distribution. This was for me one of the most interesting sessions. Following this, was very pleased to introduce a special lunchtime screening of my full one hour documentary- “Maerl:A Rare Seabed Habitat.” Being a firm believer in science communication, marine science documentaries can serve to educate, inform and transform the science and are useful tools for stakeholder management. It was great to be able to share our team’s work with scientists and educators internationally and even had one request to translate into Swedish! The final session was on “Development of standards for classification, confidence and assessment of habitat maps“- an important session to conclude on new methods to quantifying the uncertainty of the habitat map.  The conference concluded with thanking the organising committee and preparing for Geohab next year in Halifax, Canada. Overall, it was my first GeoHab in ten years and I was so inspired by the dedication of the GeoHab community – at home and abroad.

Nelson
Admiral Nelson at the Naval Museum, Portsmouth Historic Dockyard

ECSA55 – Estuarine and Coastal Sciences Conference, London

This week I attended the Estuarine and Coastal Science Association conference- ECSA55 in the Docklands, London. The theme of the conference was “Unbounded boundaries and shifting baselines”- a theme relevant to the changing seas of modern times. The plenary sessions were all very interesting and covered different perspectives to coastal sciences and management. As discussed in the maerl documentary, maerl beds will disappear from their northern range, with kelp disappearing from their southern range. More technical sessions on hydrodynamic- sediment transport modelling ran alongside scientific sessions and a diverse range of disciplines were represented. Having visited the Coral Reefs exhibition at the Natural History Museum in the same visit, the session on the Great Barrier Reef was especially interesting. The water quality at the Great Barrier Reef over the last decade is a major threat to the ecosystem. I have been working on a paper about for submission to the Estuarine, Coastal and Shelf Science journal and the early career workshop by Elsevier on publishing in scientific jorunals was very useful. Delegates came from all around the world and the most enjoyable conference dinner was aboard the Elizabethan on the River Thames! The river cruise went from Tower Bridge to Westminister to Greenwich and back to Tower Pier. I was pleased to see friends and collegues from my undergraduate and masters days and meet new ones as well! Here are some of the collection of tweet scientific highlights from the conference.

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